CHPC - Research Computing Support for the University

Spring 2022 CHPC Presentation Schedule now available!

posted: December 20th, 2021

• Hands on Intro to Linux:
  
  • Part 2: Thur, Jan 27, 1-3pm
  • Part 3: Tue, Feb 1, 1-3 pm
  • Part 4: Thur, Feb 3, 1-3pm
• Module Basics: Tue, Feb 8, 1-2pm

SDSC’s HPC/CI Training Series 2022

Posted: January 7th, 2022

CHPC ANNOUNCEMENT: New Internal Clustered DTNs in the CHPC General Environment

Posted: January 3rd, 2022

Fall 2021 CHPC Newsletter

Summer 2021 CHPC Newsletter

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CHPC ANNOUNCEMENT: CHPC staff working both remotely and hybrid schedules. 

News History...

A generic rule-based pipeline for patient cohort identification

By Jianlin Shi¹, Jianyin Shao¹, Kevin Graves¹, Celena Peters¹, Kelly Peterson², John F Hurdle¹

¹Department of Biomedical Informatics, ²Division of Epidemiology

Our aim is a one-for-all pipeline based on a use-friendly rule design app. We identify the patient cohort with high risk of heart disease for clinical trial from clinical notes with 13 heterogeneous selection criteria.

Our pipeline is demonstrated to be effective and suitable for rapid development of patient cohort identification solutions.

For more information about algorithms, see a related article in the Journal of Biomedical Informatics.

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